data-transform-vkgl\docker> docker-compose up
Starting docker_variant-formatter_1 ... done
Starting docker_uta_1 ... done
Starting docker_seqrepo_1 ... done
Attaching to docker_uta_1, docker_seqrepo_1, docker_variant-formatter_1
uta_1 | LOG: database system was shut down at 2020-09-24 04:47:43 UTC
uta_1 | LOG: MultiXact member wraparound protections are now enabled
uta_1 | LOG: autovacuum launcher started
uta_1 | LOG: database system is ready to accept connections
seqrepo_1 | WARNING:biocommons.seqrepo.cli:2018-08-21: instance already exists; skipping
docker_seqrepo_1 exited with code 0
variant-formatter_1 | No handlers could be found for logger "biocommons.seqrepo"
variant-formatter_1 | /usr/local/lib/python2.7/site-packages/bioutils/_versionwarning.py:12: UserWarning: Support for Python < 3.6 is now deprecated and will be dropped on 2019-03-31. See https://github.com/biocommons/org/wiki/Migrating-to-Python-3.6
variant-formatter_1 | "Support for Python < 3.6 is now deprecated and"
variant-formatter_1 | Local instances (/usr/local/share/seqrepo)
variant-formatter_1 | 2018-08-21
variant-formatter_1 | No handlers could be found for logger "hgvs"
variant-formatter_1 | /usr/local/lib/python2.7/site-packages/bioutils/_versionwarning.py:12: UserWarning: Support for Python < 3.6 is now deprecated and will be dropped on 2019-03-31. See https://github.com/biocommons/org/wiki/Migrating-to-Python-3.6
variant-formatter_1 | "Support for Python < 3.6 is now deprecated and"
variant-formatter_1 | Traceback (most recent call last):
variant-formatter_1 | File "./server.py", line 2, in <module>
variant-formatter_1 | from hgvs.parser import Parser
variant-formatter_1 | File "/usr/local/lib/python2.7/site-packages/hgvs/parser.py", line 28, in <module>
variant-formatter_1 | import hgvs.sequencevariant
variant-formatter_1 | File "/usr/local/lib/python2.7/site-packages/hgvs/sequencevariant.py", line 11, in <module>
variant-formatter_1 | import hgvs.variantmapper
variant-formatter_1 | File "/usr/local/lib/python2.7/site-packages/hgvs/variantmapper.py", line 17, in <module>
variant-formatter_1 | import hgvs.normalizer
variant-formatter_1 | File "/usr/local/lib/python2.7/site-packages/hgvs/normalizer.py", line 103
variant-formatter_1 | raise HGVSInvalidVariantError(f"{var}: coordinates are out-of-bounds")
variant-formatter_1 | ^
variant-formatter_1 | SyntaxError: invalid syntax