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Self-supervised nuclei segmentation (MICCAI 2020)

License: GNU General Public License v3.0

Python 100.00%

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miccai2020_self_sup_nuclei_seg's Issues

nepochs=10000?

Hello again, I found that the "nepochs=10000" in your config, and I took 3 hours to train for 100 epochs. I will cost 300 hours to finish it. So Can you tell me some more details about your training, such as how many nepochs you used and how long time finished it. Thank you!

where are program for AJI,AHD and ADC

Hello, I have got the predicted mask according to the project.
But I wonder how you calculate the ADC, AJI and AHD. So can you tell me how can I get these evaluation script ,thank you!
Sincerely!

seg_cover file format

Hello,
Which is exactly the format of the seg_cover file.
I need to generate it for my own dataset.
Best.

from openslide.examples.deepzoom import deepzoom_tile

Hi, I am trying to use this repo for my own dataset. I am wondering how can import deepzoom_tile from openslide.examples.deepzoom. I am getting an error ModuleNotFoundError: No module named 'openslide.examples'

dataroot

hello, when I use your code , it shows that it can't find slide_files. so can you tell me how can I get these files , how to use ourself dataset, and the make_tiles.py files. thank you!

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