Comments (3)
(this is an automated reply)
The development version nows contains the fix to this issue. You can try the latest version yourself using:
install.packages("remotes") # if you haven't already
remotes::install_github("msberends/AMR")
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Unfortunately, CLSI 2021 is not yet available in the publicly available WHONET software, from which we derive the CLSI interpretation values. We’ve added CLSI 2020 now.
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Fix released to official R repository
Just a small notice: we released a new software version, containing the fix to this issue. Please update your version using either the user interface of your software, or by running:
install.packages("AMR")
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Related Issues (20)
- UTI coding not being recognised in SIR interpretation HOT 12
- First isolate: ICU filtering based on wrong ordering
- typo in function name in tutorial for "Predicting future antimicrobial resistance using regression models" HOT 3
- In `clinical_breakpoints`, some values in `ref_tbl` are missing
- Problem with getting S. coagulans instead of old S. schleiferi coagulans
- `minimum_matching_score` not always considered
- Update clinical_breakpoints to WHONET 2023
- Rework EUCAST Expert Rules HOT 1
- how are IE cut-offs used in MIC graphs HOT 7
- Phenotype-based first isolate determination selects too many isolates HOT 1
- Errors in CLSI interpretation HOT 3
- Decrease time in printing tibbles HOT 1
- Add `keep_synonyms = TRUE` to internal 1st isolate determination
- Add more LOINC codes for antibiotics HOT 1
- Support for working with multiple patient species for veterinary antibiograms? HOT 1
- MIC decimals on dark RStudio too black
- Improvements for `as.mic()` and MIC plotting
- two genera/species that I can't seem to be able to classify using as.mo() HOT 2
- AMR for R as a One Health approach
- Implement mathematically sound WISCA algorithm
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