mtefagh / sparseqfca.jl

Developed a registered Julia package which quantifies the redundancies in genome-scale metabolic networks and provides local sparse certificates which are both efficiently verifiable and interpretable

About me

I am a mathematician, computer scientist, and convex optimization expert with a track record of modeling computationally demanding problems in interdisciplinary fields. For example, in my Ph.D. at Stanford, I sped up the reconstruction of metabolic networks of tens of thousands of reactions by 30 times. In the last few years, I have dedicated my efforts to developing subroutines for the COBRA toolbox and also served as a moderator for COBRA.jl, both of which are optimization tools used in systems biology. Recently, I teamed up with collaborators from MSKCC to work on a new initiative called ProtPy, which is a similar open standard aimed at optimization techniques for improving radiotherapy treatment planning. Although it is still in its early stages, I am thrilled to be a part of it. Apart from my involvement in COBRA and ProtPy, I organized a nationwide optimization contest during my first year at university. The contest focused on a systems biology problem and was tailored to research-oriented individuals. I am particularly passionate about the concept of open science and decentralized science (DeSci). I have discovered that collective efforts within the scientific community align perfectly with my past experiences and interests.

Skills

• General: Mathematical optimization, Data science, Graph theory
• Languages: Julia, Python, Matlab
• Familiar: R, Java, HTML
• Tools: Jupyter, Git, LaTeX

Contact

• 🏢 Math 205, Department of Mathematical Sciences, Sharif University of Technology
• ☎️ ([phone]
• 📧 [email protected]

sparseqfca.jl's Issues

Error tagging new release

The tag name "v0.4" is not of the appropriate SemVer form (vX.Y.Z).
cc: @mtefagh

version 1.4

@JuliaRegistrator register()

version 1.9

@JuliaRegistrator register()

version 0.7

@JuliaRegistrator register()

TagBot trigger issue

This issue is used to trigger TagBot; feel free to unsubscribe.

If you haven't already, you should update your TagBot.yml to include issue comment triggers.
Please see this post on Discourse for instructions and more details.

If you'd like for me to do this for you, comment TagBot fix on this issue.
I'll open a PR within a few hours, please be patient!

version 1.2

@JuliaRegistrator register()

version 1.8

@JuliaRegistrator register()

version 1.5

@JuliaRegistrator register()

version 1.2.1

@JuliaRegistrator register()

version 1.6

@JuliaRegistrator register()

version 1.3

@JuliaRegistrator register()

version 1.2

@JuliaRegistrator register()

version 1.7

@JuliaRegistrator register()

Error tagging new release

The tag name "v0.5" is not of the appropriate SemVer form (vX.Y.Z).
cc: @mtefagh