Comments (4)
muellan
commented on July 28, 2024
Maybe the NCBI changed something on their servers or I accidentaly broke the download script on one of the last commits. I'll check it out.
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muellan
commented on July 28, 2024
Fixed it. The scripts should work again.
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muellan
commented on July 28, 2024
By the way: Note that the NCBI RefSeq has grown quite a bit since the paper was published. This means the default database is now around 28GB on disk and around 37 GB in memory. This also impacts the query speed.
If you want to process the mapping data with some other tool you should also have a look at the output formatting options (shortly explained in the README and in "docs/query.txt".
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sturne29
commented on July 28, 2024
Thank you, I appreciate it!
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Related Issues (20)
- AFS20 database construction HOT 4
- Using as a library HOT 1
- Database load times highly and unexpectedly non-linear HOT 7
- metacache-build-refseq gets killed at 46% every time i try to build the database HOT 2
- Problem building DB with metacache-build-refseq HOT 6
- Report MetaCache version HOT 1
- Interpreting abundance profile HOT 5
- Segmentation fault (core dumped) HOT 6
- Segmentation fault when using --lowest species HOT 3
- Ion Xpress (Ion Torrent) HOT 1
- Database Build Files HOT 2
- Results Output Visualization HOT 1
- Building a custom DB HOT 2
- Merging results from querying partitioned database HOT 16
- Make throws the Invalid Option error if multiple macros are passed HOT 1
- Unranked targets when building custom DB HOT 5
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- Guidance for working with large reference data sets HOT 6
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