naivete5656 / wsctbfp

Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020

Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation

by Kazuya Nishimura, Junya Hayashida, Chenyang Wang, Dai Fei Elmer Ker, Ryoma Bise

[Home] [Project] [Paper]

Prerequisites

• python >= 3.6
• ubuntu 18.04
• CPU or GPU(NVIDIA Driver >= 430)
• matlab

Installation

Python setting

Conda user

conda env create -f=requirement.yml
conda activate pytorch

Docker user

docker build ./docker
sh run_docker.sh

Background estimation

matlab -nodesktop -nosplash -r 'Background_estimation.m

Cell detection

python predict.py

Backward Propagation

python backward_propagation.py

Forward Propagation

python forward_propagation.py

Association

python association_with_forward_propagation.py

wsctbfp's Issues

How to calculate AA (association accuracy) and TE (target effectiveness)?

Hi, thanks for your wonderful work! I want to learn how to calculate AA and TE metrics, can you show me the code or details? Thanks!

trying to run

hey, we are computer science students at Tel-Aviv university and are trying to run your code on our own data set for a school project.
it seems like we are missing files. /home/file_server/nishimura/unet_pytorch , /home/kazuya/anaconda3/envs/WSCT
we get this error when trying to run the docker: "run_docker.sh: line 3: cd: /home/file_server/nishimura/unet_pytorch: No such file or directory"

can you help?

Thanks!!