The data and code used in the analysis for the manuscript can be found in this repo.
Steps to reproduce:
git clone [email protected]:nasiegel88/2023-clinical.git
cd 2021-early-life-gut-microbiome
- Create a repo2docker conda environment
It is assumed that conda (or mamba) and docker are installed on the system.
mamba create -n repo2docker -c conda-forge jupyter-repo2docker
conda activate repo2docker
This analysis involved a lot of packages thus it will take up to 20 minutes to build the docker image. Once the image is build select
RStudio
from the Jupyter Launcher.
jupyter-repo2docker --editable .
All output PDFs will be located within the documents directory.