nathanklineinstitute / macaque_auditory_thalamocortical_model_data Goto Github PK

kedoxey@spike:~/CRCNS/Macaque_auditory_thalamocortical_model_data/model$ python init_demo.py 
Warning: no DISPLAY environment variable.
--No graphics will be displayed.
Warning: could not import interactive plotting functions; make sure the "bokeh" package is installed.
Importing simConfig from cfg_demo.py
Importing netParams from netParams.py

Start time:  2024-02-07 16:59:35.641130
Validating NetParams ...
  Error validating subConnParams:
    Key 'TCM->E' error:
    Key 'preConds' error:
    Key 'cellType' error:
    None
    <lambda>(['TCM']) should evaluate to True

NetParams validation identified some potential issues in: subConnParams. See above for details.

Creating network of 43 cell populations on 1 hosts...
TypeError: float() argument must be a string or a number, not 'hoc.HocObject'

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/kedoxey/CRCNS/Macaque_auditory_thalamocortical_model_data/model/init_demo.py", line 30, in <module>
    sim.net.createCells()                               # instantiate network cells based on defined populations
  File "/home/kedoxey/.conda/envs/python3_9-test/lib/python3.9/site-packages/netpyne/network/network.py", line 99, in createCells
    newCells = ipop.createCells()  # create cells for this pop using Pop method
  File "/home/kedoxey/.conda/envs/python3_9-test/lib/python3.9/site-packages/netpyne/network/pop.py", line 87, in createCells
    cells = self.createCellsDensity()
  File "/home/kedoxey/.conda/envs/python3_9-test/lib/python3.9/site-packages/netpyne/network/pop.py", line 293, in createCellsDensity
    randLocs = np.array(vec).reshape(self.tags['numCells'], 3)  # create random x,y,z locations
ValueError: setting an array element with a sequence.