naturalis Goto Github PK

nba-brondata-bijzcol

Bron data set for NBA on bijzondere collecties

nbclassify

Proof of concept demonstrating identification of species images using artificial neural networks.

nbclassify-data

Supplementary data for "OrchID: a Generalized Framework for Taxonomic Classification of Images Using Evolved Artificial Neural Networks"

ncov

Nextstrain build for novel coronavirus (nCoV)

nepenthes

scripts for annotated tree viz

nepenthes-3dpca

Pipeline for performing principal component analysis of 3D scans of Nepenthes pitchers

ngs-workflows

Source code, data and documentation to demonstrate automation in NGS data analysis

openstack-docs

Documentation resources IT facilities Naturalis

orchid-phylogeny

Time-calibrated, bootstrapped estimates of orchid node ages

orchid-presentation

LaTeX slides for nbclassify

orchid-report

Report for the automated slipper orchid identification project

orchid-transcriptome-pipeline

orchids

Scripts and data to analyze and visualize duplication and divergence of the MADS box genes in Orchids

phyloglmstep

phylotar-asteraceae

profungis

Processing of Fungal ITS Sequences

puppet-apexomes

puppet manifest for the apexomes analysis environment

puppet-orchid

Puppet module for OrchID

rbien

Tools for accessing the Botanical Information and Ecology Network (BIEN) database

riseandfall

Data repository for the Rise and Fall of Species

rs-lng-plugins

sdmdl

Species Distribution Modelling using Deep Learning

sdmdl-pollinators

seshat-trait-data-domesticates

Repository for aggregating comparative trait data for Ungulates and Poaceae and preparing for submission to the SESHAT database

sff2fastq

extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output

species-delimitation-data

Supplementary data repository for "Algorithmic single-locus species delimitation: effects of sampling effort, variation and non-monophyly in four methods and 1870 species of beetles"

split_on_primer

Split a FASTQ or FASTA file into sub files based on the primers used.

split_sequence

Split a sequence file into sub files based on the tags or primers used

subsistence-comparison

Data, scripts, and documentation to compare subsistence strategies by niche traits

supersmart

Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa