R functions written for a GBS project I did on Phytophthora plurivora.
Pretty much just wrapper functions for vcfR
, poppr
, ape
, and adegenet
usages.
If using, please cite: Population Structure of Phytophthora plurivora on Rhododendron in Oregon Nurseries. https://doi.org/10.1094/PDIS-12-18-2187-RE