nevillejackson / fortran

Fortran code for statistical analysis and quantitative genetics

Fortran

This repository contains various Fortran programs and subroutine libraries useful in statistical analysis and quantitative genetics. Some are my own software and some are collected from the public domain. All are free of copyright or other usage restrictions. Most of this software is documented in the traditional manner with comment lines at the beginning of each program. Some programs (eg nesreg, mcano, pivot) have pdf files.

ab

The subdirectory ab contains programs used in animal breeding calculations The subdirectory abtest contains test data for the routines in subdirectory ab.

Data manipulation

The subdirectory Charm contains Fortran5 programs for data manipulation using unit record principles, written by Anne Swinton. Charm is documented by man pages to be found in the doc subdirectory. The subdirectory charmcodedftn4 contains older Fortran4 programs for the same purpose, written by Neville Jackson and Rod Evans..

DFREML

The derivative-free REML program written by Karen Meyer. Estimates variance components and quantitative genetic parameters for mixed models.

Gflow

The subdirectory Gflow contains a program to calculate geneflow by the method of Hill(1974)

Harvey least squares program

The subdirectory Harvey contain a number of modern versions of Walter Harvey's least squares and maximum likelihood program. The subdirectory Harvey.old contains several older versions.

Kuenzi

The subdirectory Kuenzi contains programs to calculate breeding values by Niklaus Kuenzi,eth,Zuerich.

mcano

The subdirectory mcano contains a program for canonical correlation analysis using IBM SSP subroutines

Nested regression

The subdirectories nesregx contain contain the program versions nesreg2 and nesreg3. The subdirectory nesregtest contains test data for nesreg. The subdirectory nesregdoc contains documentation for all versions of nesreg.

Pamfun

The subdirectory Pamfun contains a program for calculating genetic and phenotypic parameters of a trait which is a linear or multiplicative function of several traits the parameters of which are known

pivot

The subdirectory pivot contains the pivot.f subroutine published by Garside(1971) as algorithm AS 37

Restricted selection indices

The subdirectories resix contain programs for calculation of selection indices with restrictions

Selind

The subdirectory Selind contains a selection index program by E.P.Cunningham + G.A.T.Mahon.

sr6600

The subdirectory sr6600 contains a very old collection of fortran routines used on CSIRO Control Data mainframes in the 1970's

ssp

The subdirectory ssp contains the original IBM scientific subroutine package.

Statistics

The subdirectory stats contains a collection of personal routines for statistical calculations.

What does this project hope to achieve?

Fortran code written for scientific purposes needs to be preserved in an accessible form.

fortran's Issues

add statistics topic

Thanks for uploading the codes. I have listed the repo here. I suggest adding the topic statistics in the About section.