Comments (1)
Learned in today's Nextstrain meeting that this can probably be done by nextclade sort
similar to how RSV separates A/B subtypes
from dengue.
Related Issues (17)
- Add E gene builds HOT 5
- Add workflow for producing the Nextclade dengue dataset HOT 2
- Harmonize with pathogen repo guide HOT 1
- Modernize `ncbi-field-map` in config
- Bug: Update dropped strains file to list accession instead of strain HOT 5
- ENH: Generalize taxon id to serotype map definitions to a configuration file
- Removal of genome containing plasmid sequence HOT 16
- Establish some deduplication guidelines within the phylogenetic workflow
- Switch DENV2 genotypes to numeric to be consistent with DENV1, 3, and 4 HOT 2
- Add manual serotype annotations along with justifications to "annotations.tsv" HOT 1
- Rename "subtype" to "genotype" HOT 5
- The `phylogenetic` github action cannot build from staged `ingest` data during dev-branch testing
- Update the links of FASTA and metadata in the README HOT 1
- Word of caution for genome MT597439 HOT 5
- Set root reference in phylogenetic builds
- ENH: nextclade extensions to display multiple nomenclatures
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from dengue.