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Rohit-Satyam avatar Rohit-Satyam commented on June 26, 2024 1

Kindly correct the ncbi_serotype section for this genome in https://data.nextstrain.org/files/workflows/dengue/metadata_all.tsv.zst

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j23414 avatar j23414 commented on June 26, 2024 1

Thanks @Rohit-Satyam! I've PR'd a fix (#55) and the metadata should also reflect the fix now:

wget https://data.nextstrain.org/files/workflows/dengue/metadata_all.tsv.zst
zstd -d metadata_all.tsv.zst
grep "MT597439" metadata_all.tsv 

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j23414 avatar j23414 commented on June 26, 2024 1

Just a heads-up that some of the metadata columns just changed #41 (comment) and #51

  • ncbi_serotype -> serotype_ncbi
  • nextclade_subtype -> genotype_nextclade

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Rohit-Satyam avatar Rohit-Satyam commented on June 26, 2024

Just a heads-up that some of the metadata columns just changed #41 (comment) and #51

  • ncbi_serotype -> serotype_ncbi
  • nextclade_subtype -> genotype_nextclade

But this is yet to be updated in the metadata right? Coz I still see ncbi_serotype and nextclade_subtype

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j23414 avatar j23414 commented on June 26, 2024

Correct, it'll be updated within the next 24 hours, when the next ingest-to-phylogenetic github action runs.

It's set to run once a day (~10am Pacific Time), so should start running in ~40 mins

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