Related Issues (20)
- Allow any non-empty string for marker_name and filter in schema_marker HOT 1
- SampleFileAggregation: Concatenating quantifications into a single csv
- move custom validation to groovy HOT 4
- basicpy output should be split up by sample ID HOT 1
- input_sample code path does not explicitly sort input image filenames HOT 1
- Design a mechanism to pass image pixel size to Mesmer and other tools HOT 5
- Mesmer in MacOS HOT 6
- nf-validation isn't checking the files/directories in the samplesheets HOT 1
- Issues running Exemplar001
- Module parameters
- Borrow ideas for how to design "restart" feature from sarek
- Add a staging module for macsima data.
- Add MAPS as phenotyping module
- Add Palom as a registration option
- Add staging module for PhenoImager data
- Expanding MCQuant nf-core module
- Add stardist into nf-core/mcmicro
- versions.yml files shouldn't be published with module outputs
- Should registration output be published when tma_dearray is enabled?
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from mcmicro.