Related Issues (20)
- nf-tests for UTILS_NFVALIDATION_PLUGIN and UTILS_NEXTFLOW_PIPELINE not passing
- gatk4spark/markduplicates and gatk4spark/applybqsr fail on docker_self_hosted
- nf-test (modules/nf-core/checkv/updatedatabase, docker_self_hosted) fails
- nf-test (modules/nf-core/learnmsa/align, conda) fails
- nf-test for vcf_impute_glimpse is broken because the test data has been moved
- fastq outputs are missed during cellranger mkfastq due to directory structure HOT 3
- [FEATURE] Add memory allocation option to pilon
- new module: METABINNER/GENCOVERAGEFILE HOT 1
- FASTQ_TRIM_FASTP_FASTQC:FASTP declares 5 input channels but 4 were specified
- [FEATURE] add stub to ucsc/liftover
- [FEATURE] add stub in picard/createsequencedictionary
- new module:cafe
- [FEATURE] add nf-test and fix stub in happy
- `samtools_sort` fasta is not optional HOT 2
- [FEATURE] Port pytest with `--migrate-pytest-hard` HOT 2
- new module:vsearch/deduplicate
- new module: vsearch/fastqfilter
- update modules: nextclade/run and nextclade/datasetget
- fastqscreen_fastqscreen outdir not writable
- [FEATURE] add nf-test to happy/sompy and fix stub
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