Comments (2)
The list was generated before I had tested .gz.*
type files. It does indeed seem that these are not an issue for nf-test
(I think it does a naive check for .gz
file extension before it tries opening as a gzipped file?).
I've revised the list with a regex that excludes such files.
from modules.
For wittyer the code in the stub test actually looks like this:
touch ${prefix}.json
echo "" | gzip > ${prefix}.vcf.gz
touch ${prefix}.vcf.gz.tbi
When I tested the module using touch to create the .gz.tbi
file did not lead to errors when asserting { assert snapshot(process.out).match() }
, so it seems to me that you would only need to search for modules where the file extension ends with .gz
.
from modules.
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from modules.