Related Issues (20)
- new module: ASCAT/ASCAT_TUMOR_ONLY
- Bracken module incorrect emission when -l option used
- nf-test (modules/nf-core/decoupler/decoupler, conda) is broken
- new module: imc2mc
- nf-test (modules/nf-core/pharokka/pharokka, conda) fails HOT 1
- new module: taxonkit/reformat
- new module: picard/collecttargetedpcrmetrics
- flye tests fail due to insufficient memory
- nf-tests for UTILS_NFVALIDATION_PLUGIN and UTILS_NEXTFLOW_PIPELINE not passing
- gatk4spark/markduplicates and gatk4spark/applybqsr fail on docker_self_hosted
- nf-test (modules/nf-core/checkv/updatedatabase, docker_self_hosted) fails
- nf-test (modules/nf-core/learnmsa/align, conda) fails
- nf-test for vcf_impute_glimpse is broken because the test data has been moved
- fastq outputs are missed during cellranger mkfastq due to directory structure HOT 3
- [FEATURE] Add memory allocation option to pilon
- new module: METABINNER/GENCOVERAGEFILE HOT 1
- FASTQ_TRIM_FASTP_FASTQC:FASTP declares 5 input channels but 4 were specified
- [FEATURE] add stub to ucsc/liftover
- [FEATURE] add stub in picard/createsequencedictionary
- new module:cafe
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