Comments (1)
As a note, our path here for first release will be to disable the outputs from UMI-tools from being passed on to MultiQC at this time. The pipeline already produces samtools stats from before and after dedub, and although this does not provide a bar plot for the % of reads that are detected from UMI-tools, once can see how many reads are dropped from dedup from the already provided metrics (at the top of the MultiQC report).
We will leave this issue open for re-consideration in the future (and the files from UMI-tools are still produced, simply not added to the scnanoseq
"out of the box" MultiQC report)
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Related Issues (15)
- Add support for technical replicates
- tmp dir issue in `SORT_GTF` HOT 1
- Make threads in Blaze a param
- Enhance isoquant outputs for downstream analysis
- Unexpected warning to process dependent on params HOT 1
- Remove filtered BAMs stats from MultiQC and add details in the documentation HOT 2
- Investigate uncached TAG_BARCODES HOT 1
- Speed up preextract step HOT 1
- Add 5' support HOT 1
- Add ToulligQC to raw read QC and post-extraction QC HOT 1
- Investigate Nanocomp report overwrites HOT 1
- Re-enable MultiQC for NanoComp once MultiQC issue is solved
- Find alternative optimization solution to nf-core modules to avoid linting issues
- Isoquant memory issue HOT 1
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