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Juke34 avatar Juke34 commented on June 2, 2024

I can provide you a fixed version of this file if you wish

from test-datasets.

Juke34 avatar Juke34 commented on June 2, 2024

We also found an awkward transcript at the end of the file that has a CDS of 3 nucleotides long.

I	ensembl	transcript	224563	224862	.	-	.	ID=YAR070C;Parent=YAR070C;geneID=YAR070C;gene_biotype=protein_coding;gene_name=YAR070C;gene_source=ensembl;gene_version=1;p_id=P48;transcript_biotype=protein_coding;transcript_source=ensembl;transcript_version=1;tss_id=TSS435
I	ensembl	exon	224563	224862	.	-	.	Parent=YAR070C;exon_id=YAR070C.1;exon_number=1;exon_version=1;gene_biotype=protein_coding;gene_name=YAR070C;gene_source=ensembl;gene_version=1;p_id=P48;transcript_biotype=protein_coding;transcript_source=ensembl;transcript_version=1;tss_id=TSS435
I	ensembl	CDS	224563	224565	.	-	0	Parent=YAR070C;exon_number=1;gene_biotype=protein_coding;gene_name=YAR070C;gene_source=ensembl;gene_version=1;p_id=P48;transcript_biotype=protein_coding;transcript_source=ensembl;transcript_version=1;tss_id=TSS435

Is it something normal? It sounds wrong. Maybe it should be removed.

from test-datasets.

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