Comments (2)
Basically blocked by us not having an arc structural ontology?
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Basically blocked by us not having an arc structural ontology?
More or less, yes. We could also incorporate the terms ourselves as dummies, as done so in some cases, see for example:
https://github.com/nfdi4plants/ArcGraphModel/blob/6ccf979cf38507f93897442a4d4dc4d7dee1a859/src/ArcGraphModel/Terms.fs#L30
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Related Issues (20)
- Use new equals overrides for testing CvParam equality in ARCTokenizarion tests
- Transfer ArcGraph into ARCTokenization
- `Study.parseMetadataSheetfromFile` does not parse metadata sheet: says worksheet is not present HOT 4
- `Assay.parseMetadataSheetfromFile` does not parse metadata sheet: says worksheet is not present
- [BUG] Annotation table parsing can result in CvParam lists of incorrect length when parsing incorrect building blocks HOT 1
- [Discussion] AnnotationTable.TokenizedAnnotationTable HOT 4
- [Feature Request] Annotation Table Graph
- [Discussion] is it really necessary to nest static ontology terms HOT 2
- [BUG] Study structural ontology has incorrect ID links in some cases HOT 2
- [BUG] When parsing User Comments, the name of the comment (not the value!) gets lost
- Make ARCMock accessible for consumption in other libraries HOT 1
- Refactor FileSystem token-based metadata parsing from ValidationPackage POC into ARCTokenization
- [BUG] `ARCMock.AssayMetadataTokens` misses Assay Technology Type TAN HOT 1
- `ARCMock` does not allow adding of User Comments HOT 1
- ProcessGraph parsing function (Study & Assay) only works with full paths but a function for tokens (like those for metadata sheets) would be nice
- Feature Request - Enhanced Tokenization for Specific Folders and Files
- Add integration tests for parsing ISA files from tokens
- Add CodeGenerator for structural ontologies HOT 1
- Move ControlledVocabulary to own repo HOT 1
- Use OBO.NET.CodeGeneration for structural ontology generation
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