Comments (1)
@phycologia - the new code ive been playing with for box b is under the branch "boxb testing". I just tried it with fischerella and it found boxB in both sequences. Ill change it on the test cases and we will merge this branch with the main branch soon
from cims-cyanobacterial-its-motif-slicer.
Related Issues (20)
- snowella d1d1 illuminates an issue HOT 1
- New algorithm only returns results for first sequence in fasta file with many seqs HOT 1
- d1d1 length is "1" every time. HOT 1
- Do double output for Box B when needed. HOT 1
- can we make the script load dependecies automagically??
- Genbank -g argument not working. Returns "cannot parse this..." HOT 1
- Set limit to how long BoxB can be
- User specified flanking regions would help with accuracy if the user knows what to look for.
- BoxB truncated when script uses primary box b algorithm HOT 1
- wrong boxb found with newest code HOT 9
- make length constraint for boxb on the small end HOT 1
- earlier CCTCCTT prevents finding leader/D1 HOT 4
- Changing naming of tRNAs HOT 1
- Change "motif search" to "CIMS" HOT 1
- quick fix for when using the -t flag HOT 1
- d1d1 is not outputting anything anymore... HOT 1
- cant save output file when using genbank fetch.
- synechococus and cynobium contain unique 16s ending and d1d1 beginning! HOT 8
- complete output wont save into text file if the sequence doesnt contain ITS regions HOT 1
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from cims-cyanobacterial-its-motif-slicer.