Comments (1)
nlabrad
commented on September 26, 2024
Changed the behavior of this. I see no point of asking the user if they want to skip it, most likely they want to analyze it anyway. I just wrote a warning that says "could not find the end of 16s, results may be inaccurate" and it just keeps going.
from cims-cyanobacterial-its-motif-slicer.
Related Issues (20)
- snowella d1d1 illuminates an issue HOT 1
- New algorithm only returns results for first sequence in fasta file with many seqs HOT 1
- d1d1 length is "1" every time. HOT 1
- Do double output for Box B when needed. HOT 1
- can we make the script load dependecies automagically??
- Genbank -g argument not working. Returns "cannot parse this..." HOT 1
- Set limit to how long BoxB can be
- User specified flanking regions would help with accuracy if the user knows what to look for.
- BoxB truncated when script uses primary box b algorithm HOT 1
- BoxB sequences not found in fischerella spp HOT 1
- wrong boxb found with newest code HOT 9
- make length constraint for boxb on the small end HOT 1
- earlier CCTCCTT prevents finding leader/D1 HOT 4
- Changing naming of tRNAs HOT 1
- Change "motif search" to "CIMS" HOT 1
- quick fix for when using the -t flag HOT 1
- d1d1 is not outputting anything anymore... HOT 1
- cant save output file when using genbank fetch.
- synechococus and cynobium contain unique 16s ending and d1d1 beginning! HOT 8
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from cims-cyanobacterial-its-motif-slicer.