At our meeting today, we discussed the issue with leaving the "auto-add" for new users turned on. I'm wondering if we can change the default settings for new apps so that we can disable the "All users - login required" option: https://community.rstudio.com/t/disable-functionality-of-choosing-anyone-no-login-required-in-rstudio-connect/68361/2

requestor

Lewis Barnett ([email protected])

Which app were you testing?

Gear decision support tool

What were you trying to do?

click around to test functionality/speed

What did you experience?

Very slow to visualize polygons when lots of people on it....hard to tell whether there are fewer polygons than expected or if they aren't being displayed yet due to lag

What is the name of the product?

Sarah S. squid dashboard

Link to the product's code, if available (e.g., to the GitHub Source Code)?

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

flexdashboard

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

one click from rstudio IDE

What did you experience?

rgdal gives errors when deploying, as does ecodata (https://github.com/NOAA-EDAB/ecodata)

What do you hope to experience?

notes

Tracking in https://apps-st.fisheries.noaa.gov/jira/projects/OPS/issues/OPS-5579

What is the name of the product?

Any app containing compiled C++ or dependencies of C++

Link to the product's code, if available (e.g., to the GitHub Source Code)?

n/a

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

Shiny Apps, but other products could be affected.

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

One click or Git-backed

What did you experience?

Cannot deploy app, or can deploy, but app doesn't fully work.

What do you hope to experience?

App deploys and runs as expected

Reported by Sarah S.

What is the name of the product?

flexdashboard (squid), has not been deployed successfully.

Link to the product's code, if available (e.g., to the GitHub Source Code)?

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

flexdashboard

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

One click with source code.

What did you experience?

abbreviated Error msg

Error: package or namespace load failed for 'ggplot2' in dyn.load(file, DLLpath = DLLpath, …):
unable to load shared object '/var/opt/rstudio-connect/mnt/packrat/4.2.2/v2/library/cli/***.so':
2023/06/08 16:46:11.517060599 /lib64/libc.so.6: version `GLIBC_2.32' not found

This also is an issue with a really basic flexdashboard without reactivity.

What do you hope to experience?

Possible to deploy

Originally reported by @shcaba

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

Shiny App

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

One Click from R studio

What did you experience?

Although app has been deployed previously, it did not work this time.

https://github.com/shcaba/Natural-Mortality-Tool

What is the name of the product?

NMFS Color Palettes Explorer

Link to the product's code, if available (e.g., to the GitHub Source Code)?

• https://github.com/MichaelAkridge-NOAA/NOAA-NMFS-Brand-Resources/tree/main/app/NMFS_Color_Palettes_Explorer

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

• streamlit python app

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

Via github action workflow - github hosted runner

• https://github.com/MichaelAkridge-NOAA/NOAA-NMFS-Brand-Resources/blob/main/.github/workflows/deploy_app_github_runner.yml

What did you experience?

When deploying via a GitHub action workflow(GitHub hosted runner), the process will fail. Unable to reach server. Error below:

Error: Exception trying to connect to https://test-connect.fisheries.noaa.gov/ - [Errno 110] Connection timed out
Error: Process completed with exit code 1.

and via another method this error:

Error: Error: connect ETIMEDOUT 137.75.93.30:443

What do you hope to experience?

I would hope to see it successfully deploy via a GitHub runner to streamline publishing, devops and eliminate the need for a self hosted runner.

To help with troubleshooting, I've been successful at deploying the app with the same github action and code via a self hosted runner.

So I imagine there could be some posit server config that doesn't allow specific domain traffic? But any and all help is greatly appreciated.

• https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/about-githubs-ip-addresses
• https://docs.github.com/en/get-started/using-github/allowing-access-to-githubs-services-from-a-restricted-network

Edit 20240703:
Some additional information: I also tried using the rsudio connect-publish action but got the same error. Even after generating a manifest.json file.

• https://github.com/rstudio/actions/tree/main/connect-publish
• https://github.com/sol-eng/python-examples/blob/main/.github/workflows/deploy.yml

What is the name of the product?

streamlit

Which instance is the product on (dev, test, prod)?

prod

What did you experience?

Streamlit app deploys to prod server, but once loaded the app is stuck on "Please Wait". No issues with test server deployment.
Error:

Log:

023/10/18 21:24:43.609227671 2023-10-18 21:24:43.609 Starting server...
2023/10/18 21:24:43.609463813 2023-10-18 21:24:43.609 Serving static content from /var/opt/rstudio-connect/mnt/app/python/env/lib/python3.8/site-packages/streamlit/static
2023/10/18 21:24:43.612535336 2023-10-18 21:24:43.612 Server started on port 43005
2023/10/18 21:24:43.612658503 2023-10-18 21:24:43.612 Runtime state: RuntimeState.INITIAL -> RuntimeState.NO_SESSIONS_CONNECTED
2023/10/18 21:24:43.766705704 
2023/10/18 21:24:43.766724671   You can now view your Streamlit app in your browser.
2023/10/18 21:24:43.766769429 
2023/10/18 21:24:43.766780573   Network URL: http://redacted
2023/10/18 21:24:43.766807004   External URL: http://redacted
2023/10/18 21:24:43.766809349 
2023/10/18 21:24:43.766999372 2023-10-18 21:24:43.766 Skipping PyPI version check
2023/10/18 21:24:43.767169666 2023-10-18 21:24:43.767 Setting up signal handler
2023/10/18 21:24:50.174047056 [rsc-session] Received signal: interrupt
2023/10/18 21:24:50.174146937 [rsc-session] Terminating subprocess with interrupt ...
2023/10/18 21:24:50.174418642   Stopping...
2023/10/18 21:24:50.174676771 2023-10-18 21:24:50.174 Runtime stopping...
2023/10/18 21:24:50.174753049 2023-10-18 21:24:50.174 Runtime state: RuntimeState.NO_SESSIONS_CONNECTED -> RuntimeState.STOPPING
2023/10/18 21:24:50.175294799 2023-10-18 21:24:50.175 Runtime state: RuntimeState.STOPPING -> RuntimeState.STOPPED
2023/10/18 21:24:50.309901681 [rsc-session] Terminated subprocess with signal: interrupt

What would you like to see instead?

app that operatives normally

Which app(s) are affected?

Any python apps

Are these apps used for informing management?

In the future, they will be, for now, cannot deploy

Which dependencies would you like to request?

Python needs to be activated. https://docs.posit.co/connect/admin/python/

Notes

Tracking progress on this issue in https://apps-st.fisheries.noaa.gov/jira/browse/OPS-5544

To provide more ways to organize content, we can use the connectwidgets package.

A user noted that an error message pops up when trying to change permissions on a product. Currently contacted posit support for help.

For when Kathryn is out. Currently contact listed is Kathryn.

Is your feature request related to a problem? Please describe.
Need to host this app on the web

Describe the solution you'd like
A git-backed RStudio Connect repo

Describe alternatives you've considered
Right now the app is available with local package install

Additional context
Add any other context or screenshots about the feature request here.

Approved by ST6

What is the name of the product?

n/a

Link to the product's code, if available (e.g., to the GitHub Source Code)?

One of the streamlit examples

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

streamlit (a Python library)

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

command line

What did you experience?

Alicia B experienced a certificate error. we are not sure if this is specifically related to streamlit or not at this point.

What do you hope to experience?

successful deployment

requestor

Josh London [email protected]

Which app were you testing?

decision support tool

What were you trying to do?

change the initial setting for the 'display closed area'

What did you experience?

as soon as I changed to menu, the screen went to grey

Is there a way to give partners access to products hosted on Connect without making the product generally public?

Users could benefit from guidance on how (if at all) confidential data should be used on Posit connect.

What is the name of the product?

STSSN Summary Data (by Robert H)

Link to the product's code, if available (e.g., to the GitHub Source Code)?

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

shiny app

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

not sure

What did you experience?

error on terra pkg (opened jira issue https://apps-st.fisheries.noaa.gov/jira/browse/OPS-5744)

What do you hope to experience?

successful deployment

requestor

Lewis Barnett ([email protected])

Which app were you testing?

RSC load test app

What were you trying to do?

load the app

What did you experience?

Not able to load

requestor

Josh London [email protected]

Which app were you testing?

RSC Load Test

What were you trying to do?

Running the load test

What did you experience?

sat with a blank screen for a minute or two and then went to Something Fishy is Going On screen

blastula, link for deploying from private gh repo

What is the name of the product?

illex_weekly_viewer

Link to the product's code, if available (e.g., to the GitHub Source Code)?

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

dashboard

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

dev instance

What did you experience?

Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.3.2/units/libs/units.so':
libudunits2.so.0: cannot open shared object file: No such file or directory
Calls: loadNamespace -> library.dynam -> dyn.load
Execution halted

Unable to fully restore the R packages associated with this deployment.
Please review the preceding messages to determine which package
encountered installation difficulty and the cause of the failure.

An error occurred while building your content.
This link offers advice for this kind of error:
https://docs.posit.co/connect/user/troubleshooting/#r-missing-system-library
Build error: An error occurred while building your content. (Error code: r-missing-system-library)
── Deployment complete ─────────────────────────────────────────────────────────
GET /api/applications/271/config 30ms
[2024-06-03 18:45:18.635283] Deployment log finished
✖ Deployment failed with error: An error occurred while building your content. (Error code: r-missing-system-library)

What do you hope to experience?

What is the name of the product?

Natural mortality tool

Link to the product's code, if available (e.g., to the GitHub Source Code)?

https://github.com/shcaba/Natural-Mortality-Tool

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

Shiny app

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

One click

What did you experience?

Jason Cope experienced an error message when trying to redeploy (could deploy in the past, likely before an update)

What do you hope to experience?

Seamless deployment

We need info for users specific for the NMFS connect instance. Should include info such as:

• How to use the dev, test, and prod servers
• Contacts for running into problems
• Links to examples not covered in the Generic connect user guide.

requestor
Jason Cope [email protected]

number of apps affected
One unpublished app

are apps in use?
unknown

yum install script

yum install -y libcurl-devel
yum install -y openssl-devel
yum install -y ImageMagick
yum install -y ImageMagick-c++-devel

scallop

used for management

R 4.3.6 upgraded to R 4.4 (latest)

The command failed with output:
ERROR: this R is version 4.3.2, package 'MASS' requires R >= 4.4.0

It was my understanding that we all needed to upgrade R to the latest version due to a vulnerability in previous versions. I've done so but now the app won't deploy on the dev instance.

What is the name of the product?

CruzPlot

Link to the product's code, if available (e.g., to the GitHub Source Code)?

https://github.com/SWFSC/cruzplot

Which type of product were you trying to deploy (e.g., Quarto Doc, Shiny App, etc.)?

Shiny app

How were you trying to deploy it (e.g., One click from the Rstudio IDE, Git-backed workflow)?

One click from the RStudio IDE

What did you experience?

the following error message in RStudio:

Installing igraph (2.0.3) ... 
curl: HTTP 200 https://rspm-sync.rstudio.com/bin/4.4-jammy/6b0677f8578093008c334e742a2a000eb4e643caebb441a3f5363bd365cfdbb6.tar.gz
FAILED
Error: error testing if 'igraph' can be loaded [error code 1]
/opt/R/4.4.0/lib/R/bin/R --vanilla -s -f '/opt/rstudio-connect/mnt/tmp/RtmpPzeFjD/renv-install-7c87b4e7480ae.R'
================================================================================

Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/opt/rstudio-connect/mnt/app/packrat/lib/x86_64-pc-linux-gnu/4.4.0/igraph/libs/igraph.so':
  libglpk.so.40: cannot open shared object file: No such file or directory
Calls: loadNamespace -> library.dynam -> dyn.load
Execution halted

Unable to fully restore the R packages associated with this deployment.
Please review the preceding messages to determine which package
encountered installation difficulty and the cause of the failure.

An error occurred while building your content.
This link offers advice for this kind of error:
    https://docs.posit.co/connect/user/troubleshooting/#r-missing-system-library
Build error: An error occurred while building your content. (Error code: r-missing-system-library)
── Deployment complete ─────────────────────────────────────────────────────────
✖ Deployment failed with error: An error occurred while building your content. (Error code: r-missing-system-library)

What do you hope to experience?

Successful deployment

Edit SOP so that it is as accurate as possible and make sure admins are able to access it.

What is and is not possible on Posit connect?

Posit pro drivers can help with pulling from databases, but it is not clear what is possible or allowed with nmfs databases.

This will provide a place to learn from each other

Which app(s) are affected?

Some Python apps, as some python packages are no longer supporting our current version of python, 3.8.xx

Are these apps used for informing management?

Which dependencies would you like to request?

Python 3.11.5

It would be helpful to provide a public page with some examples of products hosted on Connect.

Currently, options are to use the push button, but we haven't figured out what else is possible - it would be nice to have a workflow that allows updates from github to be automatically updated on connect.

Tracked in https://apps-st.fisheries.noaa.gov/jira/browse/OPS-5545