noaa-pmel / ocean-molecular-ecology

Main repository for NOAA Pacific Marine Environmental Laboratory Ocean Molecular Ecology group bioinformatics and data analysis.

Home for NOAA Pacific Marine Environmental Laboratory Ocean Molecular Ecology group bioinformatics and data analysis.

Authors

Zachary Gold
Sean McAllister
Shannon Brown
Han Weinrich

Protocols

PCR Protocols

Marker
Parada universal 16S
Stoeck phytoplankton 18S V4
AmaralZettler phytoplankton 18S V9
MiFish modified Universal Teleost 12S
LF metazoan COI
Baker marine mammal dLoop

Bioinformatics & Data Analysis Repositories

Metabarcoding Pipeline and Visualization software - REVAMP
Reference Database Generating Tool - rCRUX

Data Management

NOAA 'Omics Draft Data Management Guidelines

Suggested Links

Manuscripts

Gold et al. 2023 Code - Ichthyoplankton from CalCOFI Ethanol Preservative
Gold et al. 2023 Code - Signal and Noise from Metabarcoding data

NOAA Collaborators

AOML 'Omics GitHub
GLERL Github
CalCOFI Github
West Coast Ocean Biomolecular Observation Network

Disclaimer

This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.