nozerorma / transcriptomic-final-exercise Goto Github PK

Under certain conditions (mainly when not trimming), script will use every dumped fastq present in the dumped folder. This is not how it is meant to work and should be corrected by pointing the condition directly to those SRA entries specified in the first input.

Code chunks should be either removed or explained in detail, no need to copy paste the same stuff I already have in the script, but to specify which parameters are being used per tool and why these were used.

Can't make work the isPresent flag for cutadapt run