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SIMD pairwise sequence alignment

Home Page: https://crates.io/crates/parasail-rs

License: BSD 3-Clause "New" or "Revised" License

Rust 100.00%
bioinformatics sequence-alignment simd

parasail-rs's Introduction

from dataclasses import dataclass

# hey there, friends!

@dataclass
class Bioengineer:
    name: str
    bio: str
    code: list
    contact: dict

nb = Bioengineer(
    name = 'Nicolas',
    bio = 'Ph.D. student, Synthetic Biology + Machine Learning',
    code = ['Python', 'Rust', 'GO', 'TS/JS', 'C/C++'],
    contact = {
        'Homepage': 'nsbuitrago.xyz',
        'Twitter': '@NSBuitrago',
        'Mail': 'nsb5 [at] rice [dot] edu'
    }
)

parasail-rs's People

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parasail-rs's Issues

libparasail-sys: Caused by: Failed to build a native library through cargo

Hello,

I'm working on a Docker image with ENV PARASAIL_NO_VENDOR=0 set to try to force building Parasail in the image.

However, this fails with the following error:

#17 57.22         [...]
#17 57.22         --- stderr
#17 57.22         thread 'main' panicked at /root/.cargo/registry/src/index.crates.io-6f17d22bba15001f/libparasail-sys-0.1.6/build.rs:103:14:
#17 57.22         called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" }
#17 57.22         note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
#17 57.22       warning: build failed, waiting for other jobs to finish...
#17 57.22       ๐Ÿ’ฅ maturin failed
#17 57.22         Caused by: Failed to build a native library through cargo
#17 57.22         Caused by: Cargo build finished with "exit status: 101": `env -u CARGO PYO3_ENVIRONMENT_SIGNATURE="cpython-3.12-64bit" PYO3_PYTHON="/usr/local/bin/python" PYTHON_SYS_EXECUTABLE="/usr/local/bin/python" "cargo" "rustc" "--features" "pyo3/extension-module" "--message-format" "json-render-diagnostics" "--manifest-path" "/tmp/pip-install-vusmdtgp/strkit-rust-ext_fd9c7587ef434d2bb34a821cfb4ff878/Cargo.toml" "--release" "--lib"

It's hard to get much info about why this failure happens, since it comes from cmake failing to build, but there's no way to see the log as far as I can tell.

EDIT: worth noting this is on an aarch64 image

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