nvictus Goto Github PK

nbmultitask

multithreading/multiprocessing with ipywidgets and jupyter notebooks

nbviewer

Heroku app for nbconvert (rendering ipynb to static HTML)

negspy

Python NGS Repository

notedown

Markdown <=> IPython Notebook

pairix

2D indexing and querying on bgzipped text file with a pair of genomic coordinates

pandas-jupyter-paginate

Jupyter widgets-based paginator for pandas dataframes

panic-button

Nothing to panic about

paper-now

Create, edit and display a journal article, entirely in GitHub

parquet-cli

Command line (CLI) tool to inspect Apache Parquet files on the go

patchelf

A small utility to modify the dynamic linker and RPATH of ELF executables

priority-queue-dictionary

A Pythonic indexed priority queue

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

pybbi

Python bindings to UCSC BigWig and BigBed library

pybigwig

A python extension for quick access to bigWig and bigBed files

pyfaidx

Efficient pythonic random access to fasta subsequences

pypdf2

A utility to read an write pdfs with Python

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

python101

landing page for 2015 CdeC class

readthedocs.org

source code to readthedocs.org

reveal.js

The HTML Presentation Framework

scholar.py

A parser for Google Scholar, written in Python

scikit-allel

A Python package for exploring and analysing genetic variation data

scipy_proceedings

Tools used to generate the SciPy conference proceedings

selfstarter

Roll your own crowdfunding

simple-httpfs

sparse

Sparse multi-dimensional arrays for the PyData ecosystem

sublimeipython

Sublime Text 2/3 plugin to evaluate cells of code in a running IPython REPL

svgpath2mpl

SVG path parser for matplotlib

test_nbdev

umap

Uniform Manifold Approximation and Projection