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deep-learning-tensorflow

Ready to use implementations of various Deep Learning algorithms using TensorFlow.

deep_learning_for_genomics

A collection of deep learning works on genomics and healthcare. The repo can help developers and researchers to have access to datasets and codes across the globe.

deepc

A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence

deepexplain

A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability. DeepExplain also includes support for Shapley Values sampling. (ICLR 2018)

deephaem

Implementation of a deep convolutional neural network for predicting chromatin features from DNA sequence

deephic

A GAN-based method for Enhancing Hi-C data

deeplearning-biology

A list of deep learning implementations in biology

deeplearning.ai.solution

This repository contains the implementation of deep learning courses by Andrew ng on Coursera

dl

dna_protein_contacts

eeg-emotion-classification

eeg_brain_age

eeg_fmri

Supporting evidence of EEG-ms mapping manuscript

eeg_robust_microstates

eegfeatures

EEG Features to be extract from raw data.

electrophysiologydata

A list of openly available datasets in (mostly human) electrophysiology.

emagma-tutorial

A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.

epiann

Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks

fcuk

A R package designed to help people with clumsy fingers.

flask-elastic-beanstalk

fractalgenetics

Analysis of the genomic architecture and functional role of myocardial trabeculae

genomicsem

R-package for structural equation modeling based on GWAS summary data

git-paper

github-actions-demo

This demo for github actions and demo

graphreg

Chromatin interaction aware gene regulatory modeling with graph attention networks

gut-brain-mechanosensation

Neural indicators of gut-brain mechanosensation in humans manuscript codes

h-magma

hf_esnn

Codes and Scripts used in manuscript: "Hierarchical Fusion Evolving Spiking Neural Network for Adaptive Learning"

hic-data-analysis-bootcamp

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

hic-reg

HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals