Data processing scripts for Mesoscopic Quantification of Cortical Architecture in the Living Human Brain,
See https://osf.io/n5bj7/ for the Supplementary Data, Figures, and Animations.
- [Preprint] Gulban, O. F., Bollmann, S., Huber, R., Wagstyl, K., Goebel, R., Poser, B. A., Kay, K., & Ivanov, D. (2021). Mesoscopic Quantification of Cortical Architecture in the Living Human Brain. BioRxiv. <https://doi.org/10.1101/2021.11.25.470023>
Package | Tested version |
---|---|
LayNii | 2.2.0 |
ITK-SNAP | 3.8.0 |
c3d | 1.1.0 |
greedy | 1.0.1 |
Python 3 | 3.7.8 |
- NumPy | 1.15.4 |
- NiBabel | 2.5.1 |
- matplotlib | 3.1.1 |
Please refer to the Methods section of my paper, and the flowcharts inluded here to see what each python script is doing. There are 2 important steps to run any script:
- Check top level input file paths within each script.
- Execute scripts in your command line by running e.g.
python ./04_motion_correct.py
.
The project is licensed under BSD-3-Clause.