ojcharles / hivdrg Goto Github PK
View Code? Open in Web Editor NEWHIV drug resistance genotyping and synonymous / non synonymous AA mutant calling for various HIV references used in the PANGEA project
License: MIT License
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steven-kemphivdrg's Issues
refactor res db
in future:
- we will store the stanford db text files
- write a parser to allow use in add_resistance_info.R
- Look for combinations in an additional step after add_resistance_info.R
- i.e. by initially calling only lines without a "+", then looking for combinations in lines with a "+"
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