omarperacha / ps4-dataset Goto Github PK

/usr/local/lib/python3.10/dist-packages/torch/_utils.py:831: UserWarning: TypedStorage is deprecated. It will be removed in the future and UntypedStorage will be the only storage class. This should only matter to you if you are using storages directly. To access UntypedStorage directly, use tensor.untyped_storage() instead of tensor.storage()
return self.fget.get(instance, owner)()
You are using the default legacy behaviour of the <class 'transformers.models.t5.tokenization_t5.T5Tokenizer'>. This is expected, and simply means that the legacy (previous) behavior will be used so nothing changes for you. If you want to use the new behaviour, set legacy=False. This should only be set if you understand what it means, and thoroughly read the reason why this was added as explained in huggingface/transformers#24565
Traceback (most recent call last):
File "/root/ps4-dataset/main.py", line 75, in
generate_embedings('ps4_data/ps4_data/data.fasta')
File "/root/ps4-dataset/ps4_data/get_embeddings.py", line 24, in generate_embedings
all_seqs = __read_fasta(fasta_path)
File "/root/ps4-dataset/ps4_data/get_embeddings.py", line 58, in __read_fasta
with open(fasta_path, 'r') as fasta_f:
FileNotFoundError: [Errno 2] No such file or directory: 'ps4_data/ps4_data/data.fasta'