omerwe / pcgcs

Estimating heritability and genetic correlation directly and with summary statistics

Deprecated

This version of PCGC is deprecared. Please check out S-PCGC, a new and improved version that scales to millions of individuals and dozens of functional annotations.

The old code is only kept here for legacy purposes.

pcgcs's Issues

No module named pysnptools.snpreader.bed

Hi,
I got the following error after running pcgcs_direct.py --bfile1 $geno_ped --pheno1 $phen_cc --covar1 $phen_cov --prev1 $prev:

  File "/scratch/summit/PRJ041_AscertainmentCaseControl/20180304_sim_cov/PCGCs/pcgcs_direct.py", line 14, in <module>
    import pcgcs_utils
  File "/gpfs/summit/scratch/PRJ041_AscertainmentCaseControl/20180304_sim_cov/PCGCs/pcgcs_utils.py", line 9, in <module>
    from pysnptools.snpreader.bed import Bed
ImportError: No module named pysnptools.snpreader.bed

Best,
Rasool