omics-kitchen / contrapption

A JavaScript powered R package to create interactive visualizations of RNA-Seq experiment results

ContrApption

Note: ContrApption is currently in beta testing

ContrApption interactively visualizes RNA-Seq style datasets from a single function call, using HTML to create sharable documents without the need to write or host a Shiny app. ContrApption interacts with other widgets using crosstalk. For the full ContrApption vignette, click here.

Modes

There are three widgets currently supported.

Counts Boxplot

The most basic usage of ContrApption is to visualize counts in a boxplot.

Counts Table and Boxplot

ContrApption is compatible with DT via crosstalk, allowing users to interact with their datasest across a table and the boxplot.

Differential Expression Table and Boxplot

ContrApption can also create widgets that allow for comparison of the result of tests for differential expression to be explored and visualized in the boxplot.

Installation

devtools::install_github("omics-kitchen/ContrApption")

Documentation

See the full vignette here.

Misc

Git workflow

• dev: Working branch. New features are developed here.
• staging: Finished work from dev or a feature branch. Test in context here.
• master: Working, production branch.