Comments (2)
Done and dusted! Commit 868b050
Memory usage down from ~3GB to 180MB on 30 taxa x 1000 sites x 4 states x 1 rate x 1000 particles
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Holy crap! This is amazing!
On Thu, Oct 11, 2012 at 9:10 PM, Aaron Darling [email protected]:
Done and dusted! Commit 868b050868b050
Memory usage down from ~3GB to 180MB on 30 taxa x 1000 sites x 4 states x
1 rate x 1000 particles—
Reply to this email directly or view it on GitHubhttps://github.com//issues/2#issuecomment-9366084.
Frederick "Erick" Matsen, Assistant Member
Fred Hutchinson Cancer Research Center
http://matsen.fhcrc.org/
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Related Issues (20)
- Verify log likelihoods of trees sampled from sts HOT 4
- post-processing tool
- particles with incomplete trees HOT 1
- least-squares fitting of JC likelihood function HOT 1
- make terminology consistent
- simulations to help understand how good the "natural extension" is HOT 6
- check out performance of SMC on mixture distributions HOT 6
- inference ll != test ll HOT 3
- propose nodes to merge non-uniformly HOT 19
- A general system to store particle metadata HOT 11
- Evaluate semantics of state modifications HOT 6
- MCMC move diagnostics/logging HOT 1
- Read model / rate distribution parameters from posterior
- Use lcfit for attachment branch length proposals? HOT 2
- Online: cache likelihoods
- BEAGLE has moved to version 2, whereas we are using hmsbeagle-1. HOT 1
- Propose attachment uniformly over tree length, rather than uniformly over edges HOT 1
- Track induced split frequencies
- consider using a two-parameter lcfit? HOT 1
- License HOT 1
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