Comments (1)
It might be good to wait for issue #35 before putting too much work for this.
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Related Issues (20)
- Verify log likelihoods of trees sampled from sts HOT 4
- post-processing tool
- particles with incomplete trees HOT 1
- least-squares fitting of JC likelihood function HOT 1
- make terminology consistent
- simulations to help understand how good the "natural extension" is HOT 6
- check out performance of SMC on mixture distributions HOT 6
- inference ll != test ll HOT 3
- propose nodes to merge non-uniformly HOT 19
- A general system to store particle metadata HOT 11
- Evaluate semantics of state modifications HOT 6
- MCMC move diagnostics/logging HOT 1
- Read model / rate distribution parameters from posterior
- Use lcfit for attachment branch length proposals? HOT 2
- Online: cache likelihoods
- BEAGLE has moved to version 2, whereas we are using hmsbeagle-1. HOT 1
- Propose attachment uniformly over tree length, rather than uniformly over edges HOT 1
- Track induced split frequencies
- consider using a two-parameter lcfit? HOT 1
- License HOT 1
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