Comments (1)
@LindavdGvB , thanks for reporting. Could please try to install Roary in a fresh conda environment? There are reports that this seems to be related to outdated Perl packages that Roary depends on. As we have successfully tested Roary with Bakta generated GFF3s in the past, I guess it's actually an issue with Roary and older Perl packages than a Bakta issue.
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Related Issues (20)
- PSC failed! diamond-error-code=-11 HOT 2
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- Inquiry on CDS annotation HOT 2
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- pyrodigal has no attribute 'OrfFinder' HOT 11
- CRISPR prediction assertion error HOT 1
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- reproducibility - amrfinderplus-db HOT 4
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- Addition of custom codon table/improve 'rare' start codons prediction HOT 2
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- .conda/envs/bakta/lib/python3.10/site-packages/bakta/main.py", line 150, in main genome['features'][bc.FEATURE_T_RNA] = t_rna.predict_t_rnas(genome, contigs_path) HOT 1
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