Diamond Error -9 about bakta

[oschwengers]

Hi,
thanks for reporting. Have you already read and checked the issues/solutions provided here: #290 ?

[cloeme]

Hi, yes I have tried with the downgraded version but still receiving the same error:

found: 0

predict & annotate CDSs...
predicted: 2151
discarded spurious: 1
revised translational exceptions: 0
detected IPSs: 2038
Traceback (most recent call last):
File "/data/cephfs/punim1258/chloe/new_rnaseq2024/bakta/myenv/bin/bakta", line 10, in
sys.exit(main())
File "/data/cephfs/punim1258/chloe/new_rnaseq2024/bakta/myenv/lib/python3.10/site-packages/bakta/main.py", line 259, in main
cdss_psc, cdss_pscc, cdss_not_found = psc.search(cdss_not_found)
File "/data/cephfs/punim1258/chloe/new_rnaseq2024/bakta/myenv/lib/python3.10/site-packages/bakta/psc.py", line 64, in search
raise Exception(f'diamond error! error code: {proc.returncode}')
Exception: diamond error! error code: -9
(/data/cephfs/punim1258/chloe/new_rnaseq2024/bakta/myenv) [cestoque@spartan-login2 myenv]$ diamond --version
diamond version 2.1.8

Thanks heaps for the help

[oschwengers]

OK, could you run Bakta setting the --debug flag and provide me the *.log file for a deeper look into this? And if possible, the genome file would also help to reproduce this error.