Comments (3)
Hi @crarlus ,
thanks for the hint. That should not be a problem.
I'll add a --prefix
parameter soon and release a new version along with the fix for your #6 issue - maybe this week.
Best regards!
from platon.
Hi @crarlus ,
I just pushed a new commit (ef15ac2) introducing a --prefix <prefix>
option. By this, a prefix for all created files can be set:
<prefix>
.log<prefix>
.chromosome.fasta<prefix>
.plasmid.fasta<prefix>
.json<prefix>
.tsv
I'll wait with a new release to conduct some more tests on this but feel free to use this git head via git pull as described in the readme and please, let me know your feedback.
Best regards!
from platon.
@crarlus I've implemented this new feature and will close this issue. Please feel free to reopen this or a new one just in case...
from platon.
Related Issues (20)
- Blast contig results HOT 7
- Permission denied: 'prodigal' HOT 1
- The number of contigs in plasmid.fasta is not the same as the number of contigs in .tsv HOT 3
- Differences between .log and plasmid.fasta file HOT 3
- --meta missing HOT 2
- RDS is always 0.0 HOT 7
- Trouble testing on chromosomes HOT 9
- Platon report Mobilization and Conjugation HOT 2
- IndexError: list index out of range error HOT 1
- genome fasta file UNRECOGNIZED HOT 5
- Where can we find version of the RefSeq plasmid database used? HOT 1
- Strange output - is it normal? HOT 2
- Any plans for enabling user to use custom database like COMPASS HOT 1
- Option to see the 'hits' in the results HOT 1
- execution problem HOT 3
- diamond version HOT 2
- Error: No module named 'platon.platon' As #21
- Marker protein search failed! and ERROR - MAIN - diamond execution failed! diamond-error-code=-11 HOT 3
- "Marker protein search failed!" error after execution HOT 9
- Platon for long-read contigs? HOT 2
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