Stuck by BLAST in LTR finding about edta

[oushujun]

Blast may get stuck for some reason. You may kill the process and restart. If the issue persist, you can extract that line of code and run it manually or submit it here for me to test.

Thanks!
Shujun

[Yutang-ETH]

Thank you very much Shujun for your reply. I see, I will report the sequence to you if I get stuck by the same blast job again.

While I was waiting for your reply, I tried to run each haplotype assembly separately, and this time I used --sensitive 0 (I was using --sensitive 1 for my last run with the diploid assembly. Sorry for not mentioning this at the beginning). So far, EDTA runs well without getting stuck at the LTR finding step. I am not sure if I am lucky for this run or it is that --sensitive 1 increases the chance of getting stuck by blast.

Anyway, I close the issue for the moment, and I thank you very much for your communication again.

Best wishes,
Yutang