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Patrick Kunzmann's Projects

biopython icon biopython

Official git repository for Biopython (converted from CVS)

biotite icon biotite

A comprehensive library for computational molecular biology

cython icon cython

The most widely used Python to C compiler

dockq icon dockq

DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol

fastpdb icon fastpdb

A high performance drop-in replacement for Biotite's PDBFile.

gecos icon gecos

Generated color schemes for sequence alignment visualizations

gha-mamba icon gha-mamba

Test repository for reproducing Mamba issue in GitHub actions

hydride icon hydride

Adding hydrogens to molecular models

jaxtyping icon jaxtyping

Type annotations and runtime checking for shape and dtype of JAX/NumPy/PyTorch/etc. arrays. https://docs.kidger.site/jaxtyping/

libgdx icon libgdx

Desktop/Android/HTML5/iOS Java game development framework

mdtraj icon mdtraj

An open library for the analysis of molecular dynamics trajectories

metapredict icon metapredict

A machine learning based protein disorder predictor.

molecularnodes icon molecularnodes

Addon and nodes for working with structural biology and molecular data in Blender.

openmm icon openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

prody icon prody

A Python Package for Protein Dynamics Analysis

rdkit icon rdkit

The official sources for the RDKit library

rdkit-pypi icon rdkit-pypi

⚛️ RDKit Python Wheels on PyPI. 💻 pip install rdkit

scanpy icon scanpy

Single-cell analysis in Python. Scales to >1M cells.

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

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