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awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

funxboxutils

gempro

glycan.rdf

Glycan database standardisation effort

glycoworkbench

Automatically exported from code.google.com/p/glycoworkbench

hackathon_v001_rnaseq

RNAseq Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH

hdcleanup

imagej

:sparkler: Open source scientific multidimensional image processing :microscope:

isa-api

ISA tools API

isaconfigurator

The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).

isacreator

ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran and Philippe Rocca-Serra (Uni. of Oxford).

jama

OBSOLETE; see http://central.maven.org/maven2/gov/nist/math/jama/1.0.3/

javacgibinarystream

Some web cgi demos written in Java

jfuzzymachine

mrmplus

mrmplusgui

multiple_myeloma_rnaseq_drug_response_hackathon_v002

paiyetan.github.io

risa

Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomics-based assays (i.e. mass spectrometry) can be processed into an xcmsSet object (from the xcms R package).

rstudio

RStudio is an integrated development environment (IDE) for R