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License: BSD 3-Clause "New" or "Revised" License
Python library to perform memory efficient cross-sample cell mapping using single cell transciptomics (scRNA-Seq) data
License: BSD 3-Clause "New" or "Revised" License
Using the latest version of Python, a FutureWarning
is given when one uses the plot_raw
method from Dataset. The output:
[..]/lib/python3.8/site-packages/seaborn/_decorators.py:36: FutureWarning: Pass the following variable as a keyword arg: x. From version 0.12, the only valid positional argument will be `data`, and passing other arguments without an explicit keyword will result in an error or misinterpretation.
warnings.warn(
[..]/lib/python3.8/site-packages/seaborn/_core.py:1303: UserWarning: Vertical orientation ignored with only `x` specified.
warnings.warn(single_var_warning.format("Vertical", "x"))
A dirty quickfix is to specifically ignore FutureWarnings: https://stackoverflow.com/questions/15777951/how-to-suppress-pandas-future-warning
Otherwise find where exactly this happens (probably in plotting.plot_summary_data) and use the right keyword argument instead of a positional argument. More time-consuming.
The not-so-nice part right now is that using the latest version of Python (3.8.5, from creating conda environment and then installing pip in the environment (to then pip install Nabo)) and latest version of Nabo, there are a lot (eight, to be specific) of these warnings popping up, which might be a bit alienating to users wanting to try it out. Not anything that breaks, but getting a lot of warnings is not the most fun thing when trying a new package.
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