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This project looks at creating a controlled vocabulary for DICOM Pt 6 Data Dictionary with a focus on CS code strings.

License: Apache License 2.0

Jupyter Notebook 99.97% Python 0.03%

dicom2omop's Issues

Duplicates in DICOM vocabulary

I followed the steps from ReadMe to create fhir_valuesets.csv file from part16 file. When I ran the dicom_to_omop_tables.ipynb (I did some modifications for importing the files into bigquery dataset), it populated vocabulary concept (and also vocabulary and concept_class) table. The import created some duplicates. e.g. - Tissue Velocity, Ophthalmic Axial Measurements etc

Looks like Ophthalmic Axial Measurements is related to cid-30-DICOMDevice, cid-33-Modality and cid-29-AquisitionModality (refer to part16_fhir_valuesets.csv).

Should they be de-duplicated or do they need to bring this additional context (Modality, AquisitionModality and DICOMDevice) in to the concepts?

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