A list of web-based interactive biological visualizations.
If you want to contribute to this list (please do), send a pull request.
- Cancer
- Genomics
- 3D Genomics
- Metagenomics
- Epigenomics
- Proteomics
- Transcriptomics
- Populations
- Medicine
- COSMIC Cancer Browser - Browse COSMIC data by tissue type and histology.
- UCSC Xena - Explore functional genomic data sets for correlations between genomic and/or phenotypic variables.
- cBioPortal for Cancer Genomics - Visualization, analysis and download of large-scale cancer genomics data sets.
- iCoMut Beta for FireBrowse - Interactive exploration of mutation rates, mutation signatures, clinical data, gene mutations.
- MAGI - Visualization and collaborative annotation of genomic aberrations.
- iMuSE - Interactive visualization of mutational signatures and hypermutation.
- Race, Gender, and Age in TCGA - An interactive visualization of patient gender, race, and age in The Cancer Genome Atlas (TCGA) dataset.
- OASISPRO - Omics analysis tool for clinical phenotype prediction.
- UCSC Genome Browser - Interactively visualize genomic data.
- Ensembl - A genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation.
- IMP: Integrative Multi-species Prediction - Analyze your experimental results in the functional context of gene-gene networks from multiple organisms.
- PLACNETw (Example) - A graph-based tool for reconstruction of plasmids from next generation sequence pair-end datasets.
- PhyD3 (Example) - A phylogenetic tree viewer.
- Archaeopteryx (Example) - Visualization, analysis, and editing of phylogenetic trees.
- GeneMANIA - Helps predict the function of genes and gene sets.
- Mutaframe - Visualize variants of the human genome.
- HiGlass - A tool for exploring genomic contact matrices and tracks.
- Delta - An integrative analysis and visualization platform for 3D genome.
- Juicebox - Visualization for Hi-C data.
- TADkit (Example) - 3D genome browser and TADbit front-end.
- Metaviz - Interactive statistical and visual analysis of metagenomic data.
- Malaria Cell Atlas - Explore how genes are expressed across more than 500 individual Plasmodium parasites.
- Epiviz - Interactive visual analytics for functional genomics data.
- GIVe - Epigenome and genome interaction.
- WashU Epigenome Browser - Displays many sequencing-based data sets across all or part of the genome, on specific gene sets or pathways, and in the context of their metadata.
- Clustergrammer CCLE Explorer - Browse relative mRNA expression data for cancer cell lines from the Cancer Cell Line Encyclopedia (CCLE) by tissue of origin using Clustergrammer.
- COSMIC-3D (Example) - A platform for understanding cancer mutations in the context of 3D protein structure.
- EzMol - Visualisation and image production of protein and nucleic acid structures.
- LiteMol - Visualization of large-scale macromolecular structure data.
- START - Visualize RNA-seq data.
- ASAP (Example) - Analysis and interactive visualization of single-cell RNA-seq data.
- L1000FWD - Large-scale visualization of drug-induced transcriptomic signatures.
- Nextstrain - Real-time tracking of virus evolution.
- Institute for Health Metrics and Evaluation - Visualizations of disease worldwide.
- Lifespans - Visualization of the lifespans of multiple species.
- Life Expectancy - Life expectancies around the world, 1960 to 2009.
- Snake Oil Supplements? - Scientific evidence for popular health supplements.
- SieveSifter (Example) - Tool for visualizing the sieve analyses of HIV-1 vaccine efficacy trials.