pbjd Goto Github PK
Name: James Drake
Type: User
Company: Pacific Biosciences
Name: James Drake
Type: User
Company: Pacific Biosciences
Contains BLASR-derived alignment algorithm routines
BLASR: The PacBio® long read aligner
Find all significant local alignments between reads
The Dazzler Data Base
Version 1.0
FALCON: experimental PacBio diploid assembler
Image file repo
Specifications for PacBio® native file formats
Composition of all the tools necessary to run a PacBio correction workflow
pbalign maps PacBio reads to reference sequences and saves alignments to a SAM or cmp.h5 file.
PacBio Secondary Analysis Tools on Bioconda
A sequence consensus algorithm implementation based on using directed acyclic graphs to encode multiple sequence alignment
Houses relevant datastructures derived from BLASR refactor
Refactored blasr core common into a library
DAG-based consensus caller for celera assemblers unitigs
Pacbio Integration -- a consistent contour of submodule commits for all GitHub repos that we use internally
Fast, simple model for overlapping PBI reads using a kmer-based approach
Hackable smrtpipe workflows using makefiles instead of smrtpipe.py
Web-based alignment viewer, just for fun
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