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Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes

Home Page: https://pblaney.github.io/mgp1000-docs/

License: MIT License

Makefile 0.84% Nextflow 62.27% JavaScript 0.05% Shell 4.96% Python 2.55% R 28.68% Perl 0.65%
bioinformatics cancer genomics germline nextflow pipeline preprocessing somatic variant-calling whole-genome-sequencing

mgp1000's Introduction

Myeloma Genome Pipeline 1000 MGP1000 logo

Comprehensive bioinformatics pipeline for the large-scale collaborative analysis of Multiple Myeloma genomes in an effort to delineate the broad spectrum of somatic events

Pipeline Documentation

🏎️ 🏁 🏆 Let's get started ...

Citation

Hopefully soon....

Contact

If there are any further questions, suggestions for improvement, or wishes for collaboration please feel free to email: [email protected]

Acknowledgements

Author, maintainer

Patrick Blaney, MS - NYU Langone Health, Multiple Myeloma Research Program & Applied Bioinformatics Laboratories

Senior leaders

Gareth Morgan, MD, PhD - NYU Langone Health, Multiple Myeloma Research Program

Francesco Maura, MD - University of Miami, Sylvester Comprehensive Cancer Center

Kylee Maclachlan, MBBCh, PhD - Memorial Sloan Kettering Cancer Center, Myeloma Service

Brian Walker, PhD - Indiana University School of Medicine, Melvin and Bren Simon Comprehensive Cancer Center

Niels Weinhold, PhD - University Hospital Heidelberg, Myeloma Research Group

Beta testers

Dylan Gagler, MS - NYU Langone Health, Multiple Myeloma Research Program & Applied Bioinformatics Laboratories

Parvathi Sudha, MS - Indiana University School of Medicine, Melvin and Bren Simon Comprehensive Cancer Center

Travis Johnson, PhD, MSPH - Indiana University School of Medicine, Melvin and Bren Simon Comprehensive Cancer Center

Michael Durante, MD, PhD - University of Miami, Sylvester Comprehensive Cancer Center

Bachisio Ziccheddu, PhD - University of Miami, Sylvester Comprehensive Cancer Center

David Coffey, MD - University of Miami, Sylvester Comprehensive Cancer Center

Alexandra Poos, PhD - University Hospital Heidelberg, Myeloma Research Group

Implementation advice

Nicolas Robine, PhD - New York Genome Center, Computational Biology Lab

Timothy Chu, MS - New York Genome Center, Computational Biology Lab

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