pdb-redo Goto Github PK

3d-beacons-registry

alphafill

AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.

cif-tools

A suite of programs to manipulate and examine mmCIF files

density-fitness

Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA) for x-ray structures

dssp

Application to assign secondary structure to proteins

dssp-server

Web server implementation for DSSP

libcifpp

Library containing code to manipulate mmCIF and PDB files

libpdb-redo

Library containing shared code for various PDB-REDO programs

pdb-redo-archive-manager

An daemon that provides access to archived PDB-REDO entries

pdb-redo-builder

Docker files to create an image you can use to build pdb-redo executables that run on older OS's like CentOS

pdb-redo-main

core pdb-redo script, tools and data files

pdb-redo-session-manager

A session manager for PDB-REDO

platonyzer

privateer

The Swiss Army knife for carbohydrate structure validation, refinement and analysis

tortoize

Application to calculate ramachandran z-scores