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Apache cTAKES
==================================
Detail documentation can found at:
http://ctakes.apache.org

Requirements
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Java 1.6 is required to run cTAKES
Maven 3.0.0 is required for building it

Running the default pipeline in the UIMA CAS Visual Debugger
or in the Collection Processing Engine
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Run bin/runctakesCVD/CPE.sh.bat
Load AE (analysis engine)
Select desc/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextProcessor
Enter note or other text
Run analysis engine
NOTE: The included example dictionary is very small. Try a sentence such as: 
Patient took aspirin for knee pain

Using UMLS resources
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If you plan to use the UMLS Resources:
Download and unpack the UMLS resources and add them to the resources directory
from http://sourceforge.net/projects/ctakesresources/files/

Also set/export env variables
export ctakes.umlsuser=[username], ctakes.umlspw=[password]
Or add the system properties to the java args
-Dctakes.umlsuser=[username] -Dctakes.umlspw=[password]