Service wrapping Oxford Nanopore PyGuppyClient
- Free software: MIT license
- Documentation: https://guppywuppy.readthedocs.io.
- pulls FAST5 files from a fast5watch server running on a machine running MinKNOW
- sends FAST5 files to a guppy_basecall_server for real-time GPU accelerated basecalling
- saves FASTQ files in a similar format to guppy_basecaller
- compatible with Rampart analysis and visualization
ulimit -n may be set really low (e.g. 1024) and needs to be set higher for ZMQ to be able to open a large number of sockets (see issue zeromq/jeromq#183)
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.