pharmbio Goto Github PK

nw-cp

A master thesis on using Graph Neural Networks and Network Analysis approach in morphological profiling of chemical perturbated cells

omero

Repo for our omero development

pachyderm-gpu

Pachyderm workflow example using GPU resources

pb-seq_2019_l9_machine_learning

pbcharts

Chart repository for Helm

pharmbio-notebook

Docker containers for interactive notebook environments for rancher cluster

pharmbio-web

The Static (Hugo) website for pharmb.io

pharmbio_latex_templates

A series of LaTeX templates used by us

pharmbio_package

A Python package automating routine pharmaceutical bioinformatics laboratory analyses and quality control checks.

phil_lnp_modelling

Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"

pipelinegui

plaid

PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.

plaid-gui

plot_utils

Repo that groups utility functions for e.g. plotting of Conformal prediction metrics

ptp-project

Project Source Code Repository for the project "Predicting Off-Target Binding Profiles with Confidence using Conformal Prediction"

rdfio

RDF triples import, export and PHP SPARQL endpoint for Semantic MediaWiki

rms_project

Master thesis Laura Lang

robot-cellpainter

Cell painting using the UR robot arm

robot-imager

IMX imaging using the PreciseFlex robot arm and LiCONiC fridge

robotlab

Cell painting and imaging with robots

robotlab-labrobots

Web server to our LiCONiC incubator and BioTek washer and dispenser

robotvision

Machine vision system project for automated biological lab.

robot_lab_cameras

Setup for the live stream monitoring cameras of the robot lab

robot_lab_grafana_dashboards

Grafana dashboards for monitoring of the AROS lab sensors an robots

robot_lab_prometheus_exporters

rstudio-docker

Dockerfile for rstudio server with python support

sciluigi

A light-weight wrapper library around Spotify's Luigi workflow library to make writing scientific workflows more fluent, flexible and modular

scipipe-demo

Demonstrator workflows for the SciPipe paper in GigaScience

scpregression

Code for Synergy Conformal Prediction for Regression

scp_code

implementation of synergy conformal prediction